Brisbane, United States of America Hybrid

Freenome is hiring a Staff Machine Learning Scientist

About the Role

Lead AI research in a mission-driven environment focused on early cancer detection through blood-based biomarkers. As a Staff Machine Learning Scientist, you'll drive independent investigations applying deep learning, statistical modeling, and interpretability methods to complex biological data, including genomics and immunology.

What You’ll Do

  • Design and train machine learning models that detect subtle biological shifts associated with disease, emphasizing robust generalization and high accuracy
  • Apply and advance techniques in supervised, self-supervised, and contrastive learning frameworks
  • Use interpretability tools to uncover potential biological mechanisms behind model predictions
  • Collaborate closely with ML engineers and computational biologists to align model development with scalable infrastructure and biological relevance
  • Guide model deployment strategies while maintaining scientific rigor and transparency

What We’re Looking For

You have a PhD in a quantitative field and over six years of experience in industry or postdoctoral research, with a proven ability to lead applied machine learning initiatives. Your background includes:

  • Strong theoretical and practical knowledge of models including neural networks, boosting, decision forests, and generalized linear models
  • Experience with deep learning frameworks such as PyTorch, TensorFlow, or JAX, and platforms like Hugging Face
  • Familiarity with model tracking tools including MLflow, TensorBoard, or Weights & Biases
  • Proficiency in Python or another general-purpose programming language
  • Success in cross-disciplinary environments, with clear communication across scientific and engineering domains

Preferred Experience

  • Background in computational biology, genomics, or proteomics
  • Hands-on work with DNA foundation models or NGS data analysis
  • Experience in cloud-based, containerized environments (e.g., Docker on GCP, AWS, or Azure)
  • Exposure to software engineering practices such as version control, automated testing, and deployment pipelines

Work Environment

This is a hybrid position based in Brisbane, California, requiring 2–3 days per week in the office, with remote flexibility available. The role operates within a culture committed to transparency, scientific integrity, and humane innovation.

Compensation & Benefits

Salary range: $199,675 – $283,500. Eligible for equity, cash bonuses, and a comprehensive benefits package including medical, financial, and family leave protections. This organization is an equal opportunity employer, compliant with EEO and FMLA regulations, and respects EPPA rights.

Required Skills
PythonRJavaC++PyTorchTensorFlowJAXHugging FaceTensorBoardMachine LearningDeep LearningLarge Language ModelsStatistical ModelingNeural NetworksModel Aggregation PythonRPyTorchTensorFlowJAXHugging FaceTensorBoardDeep LearningMachine LearningNeural NetworksLarge Language ModelsModel AggregationDecision TreesKernel MachinesGeneralized Linear Models
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Freenome
Brisbane, California
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Posted 16 days ago